CP4 pipeline error - Githubissues

BodenmillerGroup / ImcSegmentationPipeline

A pixel classification based multiplexed image segmentation pipeline

https://bodenmillergroup.github.io/ImcSegmentationPipeline/

MIT License

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CP4 pipeline error #64

Closed SchulzDan closed 3 years ago

SchulzDan commented 3 years ago

I have an error in the CP4 pipeline module 1 (prepare ilastik) which I don't understand. I have a dataset of 163 images and 153 pass but 10 don't. The error is: "Error while processing SaveImages (Worker) ValueError: Images of type float must be between -1 and 1."

applying CP3 pipeline works without problems on all images. Any ideas what this is? Thanks

votti commented 3 years ago

This is a duplicate of: https://github.com/BodenmillerGroup/ImcSegmentationPipeline/issues/57

Currently this is fixed in the development branch, but I opened a pull request to also make the fix available in the main branch: https://github.com/BodenmillerGroup/ImcSegmentationPipeline/pull/65