Closed marinabroz closed 2 years ago
I am working in Windows 10, and I have two Mcd files for this analysis, they are both in separate zip folders with the individual txt files.
Hi @marinabroz
could you please let us know the imctools
version that you are using? The error likely means that no files could be read in. Please make sure that the input_file_regexp
variable is correctly set to find the files that you want to process.
Best,
Nils
Assuming this is fixed now
Hello,
I have successfully run the pipeline before on another computer, but on my other desktop I am running into this error.
When running this chunk in the jupyter notebook:
%%time failed_images = list() re_fn = re.compile(input_file_regexp)
for fol in folders_path_inputs: for fn in fol.glob('*'): if re_fn.match(fn.name): mcdfolder2imcfolder.mcdfolder_to_imcfolder(fn, output_folder=folder_path_ome, create_zip=False)
I am getting the following error:
AssertionError Traceback (most recent call last)