BodenmillerGroup / ImcSegmentationPipeline

A pixel classification based multiplexed image segmentation pipeline
https://bodenmillergroup.github.io/ImcSegmentationPipeline/
MIT License
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No session JSON files available #81

Closed edtruelove1 closed 2 years ago

edtruelove1 commented 2 years ago

I am running into some problems when trying to use the segmentation pipeline. I get the following error message: image

This is how I have specified the paths to my files, which may be the source of the error.

image

Many thanks for any support you can offer.

Best wishes,

Ed

yplakaka commented 2 years ago

Hi,I have the same problem,how did you solve it?

edtruelove1 commented 2 years ago

Make sure you only have one mcd file in the zipped folder (with associated txt files) and you don't need to set the path to the zip folder, just the file name. Making these changed worked for me....