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BodenmillerGroup / imcRtools

An R package for handling and analysing imaging mass cytometry data
https://bodenmillergroup.github.io/imcRtools/
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Add simple spatial graph builders #18

Closed nilseling closed 3 years ago

nilseling commented 3 years ago

Add knn-based, expansion-based (BiocNeighbours) or other (Delauney, etc) graph construction wrappers until I find a better package to handle SingleCellExperiment and SpatialExperiment objects

jwindhager commented 3 years ago

Or add support for loading edge lists from disk :innocent:

nilseling commented 3 years ago

From disk it has to go via read_steinbock. Just to make sure that vertices in the graph match to cells in the object. Or do you have an example of external edge lists that need support?

nilseling commented 3 years ago

Added in #23