Open SchulzDan opened 2 years ago
mirrored in y-direction I assume?
yes, y direction
That's because the MCD coordinate system is in fact inverted (non-standard). Little to be done about that in principle, but I can calculate the coordinate systems back & forth in the MCD (however, the coordinates displayed in napari will be wrong then, just FYI).
What if we flip the czi coordinates for visualization since it is more unlikely that someone will use those actively?
Currently not possible in a clean way (i.e., without changing data coordinates), see https://napari.zulipchat.com/#narrow/stream/212875-general/topic/coordinate.20system
currently the czi and panorama are not oriented in the same way - basically mirrored. Would be nice to have this fixed at some point.