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BodenmillerGroup / steinbock

A toolkit for processing multiplexed tissue images
https://bodenmillergroup.github.io/steinbock
MIT License
49 stars 14 forks source link

calling cellprofiler app fails in 0.13.4 #105

Closed SchulzDan closed 2 years ago

SchulzDan commented 2 years ago

steinbock apps cellprofiler Traceback (most recent call last): File "/opt/venv/bin/cellprofiler", line 5, in from cellprofiler.main import main File "/opt/venv/lib/python3.8/site-packages/cellprofiler/main.py", line 13, in import bioformats.formatreader File "/opt/venv/lib/python3.8/site-packages/bioformats/init.py", line 21, in import javabridge File "/opt/venv/lib/python3.8/site-packages/javabridge/init.py", line 38, in from .jutil import start_vm, kill_vm, vm, activate_awt, deactivate_awt File "/opt/venv/lib/python3.8/site-packages/javabridge/jutil.py", line 162, in import javabridge._javabridge as _javabridge File "_javabridge.pyx", line 1, in init _javabridge ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 80 from PyObject

jwindhager commented 2 years ago

Sorry for this, fixed with v0.13.5 currently building @SchulzDan