Hey, as discussed offline, the call steinbock preprocess imc images --hpf 50 unzipps ZIP files in a temporary directory within the container. Having many ZIP files leads to blowing out the container to 100s of GB on disk. One option might be to iteratively unzip, process and delete files within the container.
Hey, as discussed offline, the call
steinbock preprocess imc images --hpf 50unzipps ZIP files in a temporary directory within the container. Having many ZIP files leads to blowing out the container to 100s of GB on disk. One option might be to iteratively unzip, process and delete files within the container.Working with version 0.13.5