Improve DeepCell/Mesmer documentation

[jwindhager]

Directly merging this into main, to update the live online documentation for the revisions

[codecov-commenter]

Codecov Report

Base: 30.65% // Head: 30.65% // No change to project coverage :thumbsup:

Coverage data is based on head (859f9be) compared to base (368fc9e). Patch has no changes to coverable lines.

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Additional details and impacted files

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[nilseling]

For the --preprocess/--postprocess options I would copy/paste the example you give into a text file, save it at preprocess.yaml and use it. Would this work or is there more formatting that I would need to do?

[jwindhager]

You mean for the manuscript? That should work (the example includes default values, so nothing should change).

[nilseling]

I mean for the way the docs are formatted

[jwindhager]

Sorry, me being silly: was this just a question, or do you want me to change something in the docs?

[nilseling]

No no, this was just a question. Or maybe to remind you that people might just copy/paste the

        threshold: true
        percentile: 99.9
        normalize: true
        kernel_size: 128

part into a file.

[jwindhager]

Great, thanks - copying this to a file is the intended way. Could you approve the PR, maybe? Cheers :-)