BodenmillerGroup / steinbock

A toolkit for processing multiplexed tissue images
https://bodenmillergroup.github.io/steinbock
MIT License
49 stars 14 forks source link

Add `steinbock export zarr` command #170

Open jwindhager opened 1 year ago

jwindhager commented 1 year ago

To export steinbock-supported TIFF files to OME-Zarr format. Examples for how OME-Zarr files can be written in Python can be found e.g. here (note that the direct use of mcd2zarr is not necessary, since steinbock currently operates on TIFF files, not on MCD files).