Develop

[Milad4849]

• Cellpose added as an app ( steinbock/_cli/apps.py).
• Cellpose model training added (steinbock/segmentation/_cli/train.py', 'steinbock/segmentation/train.py, 'Steinbock/segmentation/_cli/_cli.py').
• Cellpose default parameters changed (steinbock/segmentation/cellpose.py).
• Cellpose model zoo added (steinbock/segmentation/_cli/cellpose.py).
• List of contributors updated (CONTRIBUTORS.md).
• CHANGELOG.md updated.
• Segmentation doc updated (docs/cli/segmentation.md).
• Utils doc updated (docs/cli/utils.md).
• Docker doc updated (docs/install-docker.md).
• Opencv-python==4.8.0.74 added to requirements, it was needed to run cellpose training (requirements.txt).
• Unifying how panel column datatypes are handled (steinbock/preprocessing/imc.py).
• Fixed No neighborhood Data in h5ad (#210)

[Milad4849]

The recent push includes change and fixes to address all the issues raised. I will now move on to test the Docker containers. After this PR is merged I will move on to address other issues via feature branches.

[nilseling]

Hi @Jonas, how should we proceed with this PR?

[jwindhager]

Hi both, sorry for not getting back to you earlier. As commented, I've only reviewed the documentation-related issues so far. Will now take a closer look at the code changes and get back to you asap.

[jwindhager]

Hi @Milad4849! Apologies for the delay, I completely missed that you re-requested a review. Will do it asap, latest at the end of this week.

CC @SchulzDan

[jwindhager]

Also, the code still contains #TODO for list-like options