BodenmillerGroup / steinbock

A toolkit for processing multiplexed tissue images
https://bodenmillergroup.github.io/steinbock
MIT License
49 stars 14 forks source link

Could not open ilastik GUI in windows #219

Closed ReethikaC closed 4 months ago

ReethikaC commented 11 months ago

/opt/ilastik/ilastik-meta/lazyflow/lazyflow/classifiers/init.py:20: UserWarning: init: Could not import tiktorch classifier warnings.warn("init: Could not import tiktorch classifier") Starting ilastik from "/opt/ilastik". QXcbConnection: Could not connect to display Fatal Python error: Aborted

Thread 0x00007f6b2bfff700 (most recent call first): File "/opt/ilastik/lib/python3.7/threading.py", line 300 in wait File "/opt/ilastik/lib/python3.7/threading.py", line 552 in wait File "/opt/ilastik/lib/python3.7/threading.py", line 1156 in run File "/opt/ilastik/lib/python3.7/threading.py", line 917 in _bootstrap_inner File "/opt/ilastik/lib/python3.7/threading.py", line 885 in _bootstrap

Thread 0x00007f6b4a3cd700 (most recent call first): File "/opt/ilastik/lib/python3.7/threading.py", line 296 in wait File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 154 in _get_next_job File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 99 in run File "/opt/ilastik/lib/python3.7/threading.py", line 917 in _bootstrap_inner File "/opt/ilastik/lib/python3.7/threading.py", line 885 in _bootstrap

Thread 0x00007f6b4abce700 (most recent call first): File "/opt/ilastik/lib/python3.7/threading.py", line 296 in wait File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 154 in _get_next_job File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 99 in run File "/opt/ilastik/lib/python3.7/threading.py", line 917 in _bootstrap_inner File "/opt/ilastik/lib/python3.7/threading.py", line 885 in _bootstrap

Thread 0x00007f6b4b3cf700 (most recent call first): File "/opt/ilastik/lib/python3.7/threading.py", line 296 in wait File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 154 in _get_next_job File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 99 in run File "/opt/ilastik/lib/python3.7/threading.py", line 917 in _bootstrap_inner File "/opt/ilastik/lib/python3.7/threading.py", line 885 in _bootstrap

Thread 0x00007f6b4bbd0700 (most recent call first): File "/opt/ilastik/lib/python3.7/threading.py", line 296 in wait File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 154 in _get_next_job File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 99 in run File "/opt/ilastik/lib/python3.7/threading.py", line 917 in _bootstrap_inner File "/opt/ilastik/lib/python3.7/threading.py", line 885 in _bootstrap

Thread 0x00007f6b630e7700 (most recent call first): File "/opt/ilastik/lib/python3.7/threading.py", line 296 in wait File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 154 in _get_next_job File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 99 in run File "/opt/ilastik/lib/python3.7/threading.py", line 917 in _bootstrap_inner File "/opt/ilastik/lib/python3.7/threading.py", line 885 in _bootstrap

Thread 0x00007f6b608e6700 (most recent call first): File "/opt/ilastik/lib/python3.7/threading.py", line 296 in wait File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 154 in _get_next_job File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 99 in run File "/opt/ilastik/lib/python3.7/threading.py", line 917 in _bootstrap_inner File "/opt/ilastik/lib/python3.7/threading.py", line 885 in _bootstrap

Thread 0x00007f6b5e0e5700 (most recent call first): File "/opt/ilastik/lib/python3.7/threading.py", line 296 in wait File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 154 in _get_next_job File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 99 in run File "/opt/ilastik/lib/python3.7/threading.py", line 917 in _bootstrap_inner File "/opt/ilastik/lib/python3.7/threading.py", line 885 in _bootstrap

Thread 0x00007f6b5b8e4700 (most recent call first): File "/opt/ilastik/lib/python3.7/threading.py", line 296 in wait File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 154 in _get_next_job File "/opt/ilastik/ilastik-meta/lazyflow/lazyflow/request/threadPool.py", line 99 in run File "/opt/ilastik/lib/python3.7/threading.py", line 917 in _bootstrap_inner File "/opt/ilastik/lib/python3.7/threading.py", line 885 in _bootstrap

Current thread 0x00007f6b6b41c740 (most recent call first): File "/opt/ilastik/ilastik-meta/ilastik/ilastik/shell/gui/startShellGui.py", line 61 in startShellGui File "/opt/ilastik/ilastik-meta/ilastik/ilastik_main.py", line 176 in main File "/opt/ilastik/ilastik-meta/ilastik/ilastik.py", line 128 in main File "/opt/ilastik/ilastik-meta/ilastik/ilastik.py", line 134 in /opt/ilastik/run_ilastik.sh: line 77: 38 Aborted "${PREFIX}/bin/python" "${PREFIX}/ilastik-meta/ilastik/ilastik.py" "$@"

Milad4849 commented 10 months ago

Hi @ReethikaC

Have you seen the heading, Graphical user interfaces on Windows under the installation section of the steinbock documentation?

ReethikaC commented 10 months ago

Hi,

I have seen the heading, GUI on Windows. I have downloaded the VcXsrv but I still cannot run the command. I see that it is untested, I wanted to raise an issue so that it will help you know the problem. And I also wanted to see if you have a solution for it.

On Tue, Aug 29, 2023 at 11:37 AM Milad4849 @.***> wrote:

Hi @ReethikaC https://github.com/ReethikaC

Have you seen the heading, Graphical user interfaces on Windows under the installation section https://bodenmillergroup.github.io/steinbock/latest/install-docker/ of the steinbock documentation?

— Reply to this email directly, view it on GitHub https://github.com/BodenmillerGroup/steinbock/issues/219#issuecomment-1697693412, or unsubscribe https://github.com/notifications/unsubscribe-auth/BCGBOZBMTY67ULDS7FNYRRTXXYEEFANCNFSM6AAAAAA4BFLG2Q . You are receiving this because you were mentioned.Message ID: @.***>

RiccardoSin commented 7 months ago

Hi,

I get the same problem after installing VcXsrv did you manage to solve the issue somehow?

Milad4849 commented 7 months ago

I am afraid this remains untested at the moment. With the next release we will make the decision to whether test and support this particular feature.