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BodenmillerGroup / steinbock

A toolkit for processing multiplexed tissue images
https://bodenmillergroup.github.io/steinbock
MIT License
49 stars 14 forks source link

deepcell error #225

Closed francescaclemente closed 7 months ago

francescaclemente commented 9 months ago

Dear developer,

I got an error when I performed the segmentation step with DeepCell:

steinbock segment deepcell –minmax

The TensorFlow library was compiled to use SSE4.1 instructions, but these aren't available on your machine. /app/entrypoint.sh: line 3: 12 Aborted (core dumped) python -m steinbock "$@"

Can you help me with it?

Thank you

nilseling commented 9 months ago

Hi @francescaclemente

Could you please let us know which steinbock version you are using and on which operating system you are performing the analysis?

jwindhager commented 9 months ago

@nilseling sounds to me like it could be a platform-related issue (e.g. arm64-based Mac)

Milad4849 commented 9 months ago

Apparently this error can occur when the CPU is too old as well.

francescaclemente commented 9 months ago

I use Ubuntu 22.04.3 LTS and the version of steinbock is 0.16.1

Milad4849 commented 9 months ago

@francescaclemente, could you also tell us which version of tensorflow you have installed and what CPU does your machine have?

Milad4849 commented 8 months ago

@francescaclemente, is there still an issue? If not, could you please close this issue?