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BodenmillerGroup / steinbock

A toolkit for processing multiplexed tissue images
https://bodenmillergroup.github.io/steinbock
MIT License
49 stars 14 forks source link

Updated citation #226

Closed nilseling closed 8 months ago

nilseling commented 9 months ago

This is to update the citation to steinbock.

codecov[bot] commented 9 months ago

Codecov Report

All modified lines are covered by tests :white_check_mark:

Comparison is base (6230d98) 30.65% compared to head (f29924c) 30.65%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #226 +/- ## ======================================= Coverage 30.65% 30.65% ======================================= Files 66 66 Lines 2512 2512 ======================================= Hits 770 770 Misses 1742 1742 ```

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nilseling commented 9 months ago

That's a good idea. I have added a note that we can share the PDF

Milad4849 commented 8 months ago

lgtm, mergin this

Milad4849 commented 8 months ago

The push to main failed, running pytest inside the container returns an error, it seems that there is currently an incompatibility between napari and pydantic (https://github.com/napari/napari/issues/6350). The only fix seems to be to pin pydantic to a version < 2. @jwindhager would you advise it? can it be done by including and version pinning pydantic in requirements_test.txt?