steinbock apps ilastik - Ilastik crashing upon startup

[Will760]

Hi team,

I am having an issue when starting the ilastik app. I have followed the installation and command-line instructions and things seem to work up until I run steinbock apps ilastik. When I run this, the ilastik logo pops up for a few seconds then disappears and the xterm window comes to the front of my screen (though there is nothing printed here). I get the following error in the terminal:

(base) wjt20@IC-FVFGM7URQ05P ~ % steinbock apps ilastik /opt/ilastik/ilastik-meta/lazyflow/lazyflow/classifiers/__init__.py:20: UserWarning: init: Could not import tiktorch classifier warnings.warn("init: Could not import tiktorch classifier") Starting ilastik from "/opt/ilastik". libGL error: No matching fbConfigs or visuals found libGL error: failed to load driver: swrast XmbTextListToTextProperty result code -2 XmbTextListToTextProperty result code -2 XmbTextListToTextProperty result code -2 XmbTextListToTextProperty result code -2 XmbTextListToTextProperty result code -2 assertion failed [rem_idx != -1]: Unable to find existing allocation for shared memory segment to unmap (VMAllocationTracker.cpp:745 remove_shared_mem) /opt/ilastik/run_ilastik.sh: line 77: 39 Trace/breakpoint trap "${PREFIX}/bin/python" "${PREFIX}/ilastik-meta/ilastik/ilastik.py" "$@"

We thought it might be some sort of memory issue but the crop files are very small and docker has access to 10gb ram so I dont think it would be overwhelming. If it is relevant, I am using a Mac with an M1 silicon chip.

Best wishes,

Will

[Will760]

Have just seen this: #25 will mark as closed.