BoevaLab / FREEC

Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
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Question about the output of freec2bed.pl #125

Open taoziyu97 opened 1 year ago

taoziyu97 commented 1 year ago

Hi,

Here is the head of output after I run the freec2bed.pl. So what are the columns represent? The first is chromosomes. What about the same number in the second and third columns? It makes me confused.

chr1 1 100001 2.61068
chr1 400001 400001 1.596808
chr1 600001 600001 26.5528
chr1 700001 700001 2.56038

Here is the script that I run to get the results.

perl freec2bed.pl -f sample_sorted.bam_ratio.txt > bedfile

Looking forward to your reply.