captureRegions in configure

BoevaLab / FREEC

Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

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captureRegions in configure #37

Open lkalbert001 opened 6 years ago

lkalbert001 commented 6 years ago

Hello, Thanks for your developing about FREEC. And I have a confusion about the configure content. I don't know what the meaning of chr 0-based start 1-based end at captureRegions . I know what is 0-based or 1-based respectively, but I can't understand why you will mix them. Looking forward for your reply.

valeu commented 6 years ago

If your region makes 1 bp, the coordinates should have 1bp difference, e.g., chr4 10000 10001

I am not sure my answer is clear enough.