Running ONCOCNV gets different copy number prediction / p value each time

BoevaLab / ONCOCNV

ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data

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Running ONCOCNV gets different copy number prediction / p value each time #11

Open ruochenj opened 3 years ago

ruochenj commented 3 years ago

Dear authors,

Running the latest version of ONCOCNV V7.0 generates different output including copy number predictions and p values each time. I think setting a seed inside processSamples.R is needed. Would you update your package and make sure that each run generates consistent copy number prediction and p values?

Best, Ruochen