Bad IUPAC sequence in glycowork/glycan_data/v9_df_species.csv

BojarLab / glycowork

Package for processing and analyzing glycans and their role in biology.

https://Bojarlab.github.io/glycowork

MIT License

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Bad IUPAC sequence in glycowork/glycan_data/v9_df_species.csv #31

Closed edwardsnj closed 8 months ago

edwardsnj commented 9 months ago

I found the following bad IUPAC sequence in glycowork/glycan_data/v9_df_species.csv:

GlcNAc(b1-2)Man(a1-?)[Man(a1-?)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)GlcNAc

It is missing a ] just before the reducing end GlcNAc.

Bribak commented 9 months ago

Thanks for picking that up! We'll fix it in the root dataset; though that will only roll out with 1.1 as changing the dataset usually causes some downstream changes etc.

Bribak commented 8 months ago

Commit 517f3ae has solved this issue and we have put methods in place to prevent that kind of error to enter the database again. The file is already available on the dev branch and will be merged into main soon (hopefully end of the week)