Add pip setup.py

[oschwengers]

Hello, thanks for providing DeepSig - a wonderful and open alternative to SignalP!

However, it is not available via PyPI or Conda which unfortunately decreases its overall usability.

Hence, might it be possible to add a pip-conform setup.py to this repository (along with potentially required changes) and upload it to https://pypi.org?

By doing so, it would also be straightforward to create a related bioconda package. Thanks in advance best regards!

[oschwengers]

I've tried to come up with a first solution:

16

[oschwengers]

Hi @savojard , thanks for merging the PR. Unfortunately, I cannot access (HTTP 404) the PyPI repository you've mentioned: https://pypi.org/project/deepsig-dist.

Could you please check, if the repo is online and public?

[savojard]

Hi @oschwengers,

sorry but I had to remove the PyPI repo because of problems in the installation of dependencies. I'm working on it and I'll let you when the repo is ready. Sorry for that. Thank you

Cas

[savojard]

Hi this is the link to PyPI repo:

https://pypi.org/project/deepsig-biocomp/0.9/

I had to change a bit setup.py (importing deepsig module there didn't work during package building). Please, do some testing on a clean environment. Best,

Cas

[oschwengers]

awesome and thanks for sharing. I'll start to work on the conda package next week.

[oschwengers]

I've installed DeepSig via PyPI and successfully tested it. To keep some order, I'll close this issue and create a new one for the bioconda package.