Borda / ij-CMP-BIA

Extension for ImageJ (Fiji) by BIA segmentation methods as plugins and some other useful API for image segmentation.
http://imagej.net/CMP-BIA_tools
GNU General Public License v3.0
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No ROIs generated while segmenting gray images #2

Open bpavie opened 7 years ago

bpavie commented 7 years ago

The plugin is working great, however, if I open Lena, convert to 8bits gray and process the image using the JSlic plugin, no ROIs show-up into the ROI manager:

run("Lena (68K)");
run("8-bit");
run("jSLIC superpixels 2D", "init.=30 regularisation=0.20 export overlap=none colour indexed");

However, the segmentation happens.

It is not the case if the image is not converted to gray-scale.

Borda commented 7 years ago

It seem that problem is in visualization part and some how with this particular image, because other gray image is fine:

run("AuPbSn 40 (56K)");
run("8-bit");
run("jSLIC superpixels 2D", "init.=30 regularisation=0.20 export overlap=none");