support for Windows & CI

[Borda]

Description

adding testing also for Windows, need to be fixed

Type of change

Please delete options that are not relevant.

• [x] Bug fix (non-breaking change which fixes an issue)
• [ ] New feature (non-breaking change which adds functionality)
• [ ] Breaking change (fix or feature that would cause existing functionality to not work as expected)
• [ ] This change requires a documentation update

Checklist:

• [x] My code follows the style guidelines of this project
• [x] I have performed a self-review of my own code
• [x] I have commented my code, particularly in hard-to-understand areas
• [ ] I have made corresponding changes to the documentation
• [ ] My changes generate no new warnings
• [ ] I have added tests that prove my fix is effective or that my feature works
• [ ] New and existing unit tests pass locally with my changes
• [ ] Any dependent changes have been merged and published in downstream modules

[codecov[bot]]

Codecov Report

Merging #32 (012ad1b) into master (2ef3348) will increase coverage by 0%. The diff coverage is 100%.

@@          Coverage Diff          @@
##           master    #32   +/-   ##
=====================================
  Coverage      96%    97%           
=====================================
  Files          16     16           
  Lines        3971   3976    +5     
=====================================
+ Hits         3832   3837    +5     
  Misses        139    139           

[pep8speaks]

Hello @Borda! Thanks for updating this PR.

• In the file experiments_ovary_centres/run_center_candidate_training.py:

Line 212:111: E501 line too long (116 > 110 characters) Line 469:111: E501 line too long (118 > 110 characters) Line 711:111: E501 line too long (120 > 110 characters) Line 754:111: E501 line too long (115 > 110 characters) Line 784:111: E501 line too long (115 > 110 characters)

• In the file experiments_ovary_detect/run_cut_segmented_objects.py:

Line 74:111: E501 line too long (120 > 110 characters) Line 108:111: E501 line too long (115 > 110 characters)

• In the file imsegm/ellipse_fitting.py:

Line 98:111: E501 line too long (116 > 110 characters) Line 101:111: E501 line too long (116 > 110 characters) Line 104:111: E501 line too long (117 > 110 characters)

Comment last updated at 2021-07-11 13:55:55 UTC

[Borda]

may be fixed by https://github.com/Borda/pyGCO/pull/22 as the error is the same:

____________________ ERROR collecting imsegm/graph_cuts.py ____________________
C:\hostedtoolcache\windows\Python\3.6.8\x64\lib\site-packages\gco\__init__.py:5: in <module>
    from pygco import *  # noqa: F401 F403
E   ModuleNotFoundError: No module named 'pygco'

During handling of the above exception, another exception occurred:
C:\hostedtoolcache\windows\Python\3.6.8\x64\lib\site-packages\gco\pygco.py:7: in <module>
    from cgco import _cgco, _SMOOTH_COST_FN
E   ModuleNotFoundError: No module named 'cgco'

During handling of the above exception, another exception occurred:
imsegm\graph_cuts.py:13: in <module>
    from gco import cut_general_graph
C:\hostedtoolcache\windows\Python\3.6.8\x64\lib\site-packages\gco\__init__.py:7: in <module>
    from gco.pygco import *  # noqa: F401 F403
C:\hostedtoolcache\windows\Python\3.6.8\x64\lib\site-packages\gco\pygco.py:9: in <module>
    from .cgco import _cgco, _SMOOTH_COST_FN
C:\hostedtoolcache\windows\Python\3.6.8\x64\lib\site-packages\gco\cgco.py:46: in <module>
    _cgco = np.ctypeslib.load_library(_CGCO_LIB_NAME, _CGCO_LIB_PATH)
C:\hostedtoolcache\windows\Python\3.6.8\x64\lib\site-packages\numpy\ctypeslib.py:150: in load_library
    return ctypes.cdll[libpath]
C:\hostedtoolcache\windows\Python\3.6.8\x64\lib\ctypes\__init__.py:423: in __getitem__
    return getattr(self, name)
C:\hostedtoolcache\windows\Python\3.6.8\x64\lib\ctypes\__init__.py:418: in __getattr__
    dll = self._dlltype(name)
C:\hostedtoolcache\windows\Python\3.6.8\x64\lib\ctypes\__init__.py:348: in __init__
    self._handle = _dlopen(self._name, mode)
E   OSError: [WinError 193] %1 is not a valid Win32 application
____________________ ERROR collecting imsegm/pipelines.py _____________________
C:\hostedtoolcache\windows\Python\3.6.8\x64\lib\site-packages\gco\__init__.py:5: in <module>
    from pygco import *  # noqa: F401 F403
E   ModuleNotFoundError: No module named 'pygco'