New units context manager function core.units that allows users to load unit-based functionality and then run checks using context from pysb.units import units; with units():. The context manager applies the unitize and check functions automatically so users don't need to do it manually.
Optional unit argument for Parameter that allows unit specification when initializing a new model parameter: Parameter(...,..., unit="...") which is equivalent to Unit(Parameter(..,..) "unit")).
New examples sub-package with:
unit-ed version of bngwiki_simple model - adpated from pysb.examples.bngwiki_simple.
unit-ed version of the jnk3_no_ask1 model - adpated from the JARM/model_analysis/jnk3_no_ask1.py model.
Fixed
Problem converting composite units with molar concentrations to their equivalent with number of molecules and updating the associated parameter. Updated the ParameterUnit.convert function to account for this.
Problem in the string repr for Parameters with units set to None, as well as the processing in ParameterUnit that now skips the conversion related to SimulationUnits settings when the input unit is None.
Added
core.unitsthat allows users to load unit-based functionality and then run checks using contextfrom pysb.units import units; with units():. The context manager applies theunitizeandcheckfunctions automatically so users don't need to do it manually.unitargument forParameterthat allows unit specification when initializing a new model parameter:Parameter(...,..., unit="...")which is equivalent toUnit(Parameter(..,..) "unit")).examplessub-package with:bngwiki_simplemodel - adpated frompysb.examples.bngwiki_simple.jnk3_no_ask1model - adpated from theJARM/model_analysis/jnk3_no_ask1.pymodel.Fixed
ParameterUnit.convertfunction to account for this.None, as well as the processing in ParameterUnit that now skips the conversion related toSimulationUnitssettings when the input unit isNone.