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BorgwardtLab / proteinshake

Protein structure datasets for machine learning.
https://proteinshake.ai
BSD 3-Clause "New" or "Revised" License
99 stars 8 forks source link

Submission #224

Closed timkucera closed 1 year ago

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 81.53% and project coverage change: -0.15 :warning:

Comparison is base (898b2c2) 84.22% compared to head (4ded4ec) 84.08%.

:exclamation: Current head 4ded4ec differs from pull request most recent head 08d4577. Consider uploading reports for the commit 08d4577 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #224 +/- ## ========================================== - Coverage 84.22% 84.08% -0.15% ========================================== Files 43 45 +2 Lines 1699 1759 +60 ========================================== + Hits 1431 1479 +48 - Misses 268 280 +12 ``` | Flag | Coverage Δ | | |---|---|---| | pytest | `84.08% <81.53%> (-0.15%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://app.codecov.io/gh/BorgwardtLab/proteinshake/pull/224?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab) | Coverage Δ | | |---|---|---| | [proteinshake/datasets/\_\_init\_\_.py](https://app.codecov.io/gh/BorgwardtLab/proteinshake/pull/224?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab#diff-cHJvdGVpbnNoYWtlL2RhdGFzZXRzL19faW5pdF9fLnB5) | `100.00% <ø> (ø)` | | | [proteinshake/datasets/rcsb.py](https://app.codecov.io/gh/BorgwardtLab/proteinshake/pull/224?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab#diff-cHJvdGVpbnNoYWtlL2RhdGFzZXRzL3Jjc2IucHk=) | `81.96% <ø> (ø)` | | | [proteinshake/datasets/scop.py](https://app.codecov.io/gh/BorgwardtLab/proteinshake/pull/224?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab#diff-cHJvdGVpbnNoYWtlL2RhdGFzZXRzL3Njb3AucHk=) | `62.96% <ø> (ø)` | | | [proteinshake/datasets/tm\_align.py](https://app.codecov.io/gh/BorgwardtLab/proteinshake/pull/224?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab#diff-cHJvdGVpbnNoYWtlL2RhdGFzZXRzL3RtX2FsaWduLnB5) | `95.55% <ø> (ø)` | | | [proteinshake/frameworks/dataset.py](https://app.codecov.io/gh/BorgwardtLab/proteinshake/pull/224?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab#diff-cHJvdGVpbnNoYWtlL2ZyYW1ld29ya3MvZGF0YXNldC5weQ==) | `83.33% <ø> (ø)` | | | [proteinshake/frameworks/dgl.py](https://app.codecov.io/gh/BorgwardtLab/proteinshake/pull/224?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab#diff-cHJvdGVpbnNoYWtlL2ZyYW1ld29ya3MvZGdsLnB5) | `90.90% <ø> (ø)` | | | [proteinshake/frameworks/np.py](https://app.codecov.io/gh/BorgwardtLab/proteinshake/pull/224?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab#diff-cHJvdGVpbnNoYWtlL2ZyYW1ld29ya3MvbnAucHk=) | `85.71% <ø> (-1.79%)` | :arrow_down: | | [proteinshake/frameworks/nx.py](https://app.codecov.io/gh/BorgwardtLab/proteinshake/pull/224?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab#diff-cHJvdGVpbnNoYWtlL2ZyYW1ld29ya3MvbngucHk=) | `100.00% <ø> (ø)` | | | [proteinshake/frameworks/pyg.py](https://app.codecov.io/gh/BorgwardtLab/proteinshake/pull/224?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab#diff-cHJvdGVpbnNoYWtlL2ZyYW1ld29ya3MvcHlnLnB5) | `100.00% <ø> (ø)` | | | [proteinshake/frameworks/tf.py](https://app.codecov.io/gh/BorgwardtLab/proteinshake/pull/224?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab#diff-cHJvdGVpbnNoYWtlL2ZyYW1ld29ya3MvdGYucHk=) | `90.00% <ø> (ø)` | | | ... and [22 more](https://app.codecov.io/gh/BorgwardtLab/proteinshake/pull/224?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BorgwardtLab) | |

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timkucera commented 1 year ago

hitting runner's compute limits, merging anyway (tests pass locally)