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BouchardLab / nsds_lab_to_nwb

Python package to convert NSDS Lab data to NWB files.
https://nsds-lab-to-nwb.readthedocs.io/en/latest/
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Tdt extractor #10

Closed jthermiz closed 3 years ago

jthermiz commented 3 years ago

I tested this again and it looks like it doesn't write the data correctly to disk. I suspect it has to do with the iterative write. I reverted back to the simple write and it works fine now. We should test this out on a typical 30 minute recording run on catscan. If it fails due to memory constraints, then I can dig into making iterative write work. Other changes include:

-Error handling in case the user inputs stream name that doesn't exist (eg. 'ECoG') addressing #8 -Added additional helper methods -Updated comments and formatting

jthermiz commented 3 years ago

Fyi, I tested R75_B5 a ~25 min dataset on my local workstation (w/ 32 GB RAM) and 'test_tdt_manager.py' finished ~1 minute with no issue.

KrisBouchard commented 3 years ago

Nice

KB

On Mar 21, 2021, at 8:39 PM, John Hermiz @.***> wrote:

 Fyi, I tested R75_B5 a ~25 min dataset on my local workstation (w/ 32 GB RAM) and 'test_tdt_manager.py' finished ~1 minute with no issue.

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