Get test folder setup on catscan

BouchardLab / nsds_lab_to_nwb

Python package to convert NSDS Lab data to NWB files.

https://nsds-lab-to-nwb.readthedocs.io/en/latest/

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Get test folder setup on catscan #36

Closed JesseLivezey closed 3 years ago

jihyunbak commented 3 years ago

@JesseLivezey @jthermiz Which folder(s) on catscan are you using to pull the inputs from?

I am currently using

NSDS_DATA_PATH='/clusterfs/NSDS_data/hackathon20201201/TTankBackup/'
NSDS_STIMULI_PATH='/clusterfs/NSDS_data/hackathon20201201/Stimulus/'

as my test data and stimuli paths, but I don't see John's .mat file renaming (as mentioned in this PR discussion) in this stimulus folder.

JesseLivezey commented 3 years ago

@jihyunbak I've been testing things locally on 2 blocks I copied off catscan.

It looks like

export NSDS_STIMULI_PATH="/clusterfs/NSDS_data/stimuli"

should work on catscan now. For the datapath, sometime soon, we should select a (mostly) fixed set of blocks to test against and move them into a specific read-only folder on catscan. That could be /clusterfs/NSDS_data/raw or maybe we should have a specific testing folder and raw is more of a workspace.

jihyunbak commented 3 years ago

Addressed by #59