process different stimuli types

[jihyunbak]

Description and related issues

Now successfully processes (tone, tone150, timit, dmr, nan, wn2) without neural data resampling; tone_diagnostic needs additional input in list_of_stimuli.yaml.

Includes Jesse's commits (manual rebase) from PR #69 .

Should be reviewed at the same time with a PR to the metadata library repo (below)

Partially addresses issues #71 and #72 .

Changes outside this repo:

• Metadata library — co-developing with this PR in the metadata repo

  • https://github.com/BouchardLab/NSDSLab-NWB-metadata/pull/6

  Did not pull this PR in the catscan metadata repo /clusterfs/NSDS_data/NSDSLab-NWB-metadata/

• Stimulus library

  • Added /clusterfs/NSDS_data/stimuli/Tone/Tone.stimVls.mat (copied from mars.configs)

Status:

Test blocks that were failing before this PR:

# --------------------------------------------------------------
# new test blocks: RVG16_{B02, B04, B05, B06, B07, B08, B09, B10}
#     - B02, B04, B05: tone_diagnostic (no associated files in list_of_stimuli.yaml)
#     - B06: Tone                                <<<<<<< now passes with resample_data=False
#     - B07: Tone150                             <<<<<<< now passes with resample_data=False
#     - B08: TIMIT                               <<<<<<< now passes with resample_data=False
#     - B09: stimulus 'nan'                      <<<<<<< now passes (handled by Stopping gracefully)
#     - B10: dmr                                 <<<<<<< now passes (handled by not tokenizing)
# legacy test block: R56_B10: metadata yaml not found in data_path
# ———————————————————————————————

Checklist:

• [ ] All tests pass on catscan: run pytest --basetemp=tmp -sv -n 8 tests on catscan from the root directory
• [x] If needed, docs have been update: docs/source has been updated for any added, moved, or removed files - N/A
• [x] Docs build with no errors: run make clean & make html from the docs folder
• [ ] No python formatting errors: run flake8 nsds_lab_to_nwb tests from the root directory

[jihyunbak]

Thanks for the very timely review @JesseLivezey ! Okay, I think this PR achieved some of my goals, in that the repo now allows us to process stimuli other than wn2. I'll merge now & let's handle those issues separately!