Unable to append nwb file error in preprocess_folder

jthermiz commented 2 years ago

https://github.com/BouchardLab/process_nwb/blob/64662d1143baa32429266bef8e3945be4ed97f0a/scripts/preprocess_folder#L39

The line referenced above generates this error:

OSError: Unable to create file (unable to open file: name = '/home/jhermiz/data/aer/RVG16/RVG16_B01/RVG16_B01.nwb', errno = 17, error message = 'File exists', flags = 15, o_flags = c2)

I made sure to close all instances of this nwb that may have been open elsewhere
This is seems like a pynwb issue... wanted to post it here in case I did something silly

jthermiz commented 2 years ago

Nevermind

jthermiz commented 2 years ago

Nevermind again... thought I got this working but tricked myself.

jthermiz commented 2 years ago

This issue is somewhat related to this issue posted on the pynwb, but not exactly the same bc the errors are different:

https://github.com/NeurodataWithoutBorders/pynwb/issues/1239

jthermiz commented 2 years ago

Using pynwb=2.0.0

BouchardLab / process_nwb

Unable to append nwb file error in preprocess_folder #49