bamql does not run after compiling it

[arturomarin]

Hi,

I am trying to use bamql somehow. I have tried to compile it in Linux (Ubuntu), specifically in:

(base) ubuntu@ip-172-31-37-145:~$ lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description:    Ubuntu 22.04.1 LTS
Release:    22.04
Codename:   jammy

and in an Amazon Web Services AMI. The commands that I executed were the following

sudo apt-get install autotools-dev build-essential libhts-dev libtool libpcre++-dev llvm-dev pkg-config uuid-dev zlib1g-dev
git clone https://github.com/BoutrosLaboratory/bamql.git
cd bamql
autoreconf -i && ./configure && make && sudo make install

I add the file compiling_end.txt with the final part of the terminal output. compiling_end.txt

when I try to run bamql the terminal gives me the following error:

(base) ubuntu@ip-172-31-37-145:~$ bamql
bamql: error while loading shared libraries: libbamql-cpl.so.1: cannot open shared object file: No such file or directory

Any suggestion?

[apmasell]

Try running sudo ldconfig and see if that works. Try running ldd /usr/local/bin/bamql and check is /usr/local/lib/libbamql-cpl.so.1 got installed