BradhamLab icat issues - Githubissues

BradhamLab / icat

Identifying Cell-states Across Treatments

BSD 3-Clause "New" or "Revised" License

4 stars 1 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

With you.

#29 RomanTurner closed 1 year ago
1
Bump numpy from 1.21.6 to 1.22.0

#28 dependabot[bot] closed 2 years ago
1
Create documentation website

#27 dakota-hawkins opened 2 years ago
0
Install Error

#26 LenisLin closed 2 years ago
5
simulate.population_markers() fails when perturbed population present.

#25 dakota-hawkins closed 3 years ago
1
Possible Projects for BRITE 2021

#24 dakota-hawkins closed 2 years ago
5
Perturbation collapses subpop identity

#23 dakota-hawkins closed 3 years ago
1
Save all NCFS weights

#22 dakota-hawkins closed 4 years ago
0
Identify stable marker genes in perturbed datasets

#21 dakota-hawkins closed 4 years ago
1
Switch trend plot to sns.regplot

#20 dakota-hawkins closed 5 years ago
1
Don't merge identical controls upon petrubation merging

#19 dakota-hawkins closed 5 years ago
0
Log transform counts for icat + scan

#18 dakota-hawkins closed 5 years ago
0
Pre-process datasets independently in seurat

#17 dakota-hawkins closed 5 years ago
0
Adapt SnakeMake rules to expect single adata

#16 dakota-hawkins closed 5 years ago
1
Main() function in generate_simulated_datasets does not handle perturbation merging.

#15 dakota-hawkins closed 5 years ago
0
benchmark_scanorama does not run from snakemake

#14 dakota-hawkins closed 5 years ago
0
Generated Kang data does not maintain cell/gene metadata.

#13 dakota-hawkins closed 5 years ago
1
Get harmony data, compare

#12 dakota-hawkins closed 5 years ago
1
Rewrite Evaluation Pipeline to expect .csvs

#11 dakota-hawkins closed 5 years ago
0
Add centroid distance as metric for cluster separtion

#10 dakota-hawkins closed 4 years ago
1
Implement icat model to cluster cells across treatments

#9 dakota-hawkins closed 5 years ago
0
Implement lda/qda w shrunken centroids to find control space

#8 dakota-hawkins closed 5 years ago
0
Add Adjusted Rand Index as metric for treatment cluster validation

#7 dakota-hawkins closed 5 years ago
0
Add LISA as metric for perturbation deconvolution

#6 dakota-hawkins closed 4 years ago
1
Add q-statistic as metric for perturbation deconvolution

#5 dakota-hawkins closed 4 years ago
1
Add Moran's I as a metric for perturbation deconvolution

#4 dakota-hawkins closed 4 years ago
1
Ensure dropout probability calculation is using medians across populations

#3 dakota-hawkins closed 5 years ago
1
Ensure non-target genes are not having parameters altered during perturbation

#2 dakota-hawkins closed 5 years ago
0
Change Marker Gene Implementation

#1 dakota-hawkins closed 5 years ago
1