search

BradhamLab / scPipe

Pipeline for scRNAseq read alignment
Apache License 2.0
0 stars 0 forks source link

Look into BCSeq Quantification for V 0.2 #35

Closed dakota-hawkins closed 6 years ago

dakota-hawkins commented 6 years ago

Liang Chen, Sika Zheng; BCseq: accurate single cell RNA-seq quantification with bias correction, Nucleic Acids Research, Volume 46, Issue 14, 21 August 2018, Pages e82, https://doi.org/10.1093/nar/gky308

https://www.ncbi.nlm.nih.gov/pubmed/29718338

dakota-hawkins commented 6 years ago

No easy implementation of BCSeq. Used tpm + absolute quantification via monocle instead. See commit 2137ebf.