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BradhamLab
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scPipe
Pipeline for scRNAseq read alignment
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Implement Cluster Analysis
#42
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dakota-hawkins
closed
6 years ago
dakota-hawkins
commented
6 years ago
[x] Subset down to most informative genes (variability, tf-idf genes, etc.)
[x] Transform informative genes to UMAP space
[x] Perform Louvain clustering on data using UMAP transformation
[x] Perform pairwise
G-Tests
between treatments.
[x] Create plots showing deviation between expected and observed, denote statistically significant differences.