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BradhamLab
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transPipe
Pipeline for denova assembly of a transcriptome.
Apache License 2.0
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Rename Omega files
#18
dakota-hawkins
opened
6 years ago
0
rCorrector fails a lot
#17
dakota-hawkins
closed
6 years ago
3
Use TrinoTate to annotate post-TACO transcriptome
#16
dakota-hawkins
opened
6 years ago
0
Use TransDecoder to get ORF data
#15
dakota-hawkins
opened
6 years ago
0
Perform transcript quantification in Trinity
#14
dakota-hawkins
opened
6 years ago
0
Apply TransRate post Trinity assembly
#13
dakota-hawkins
opened
6 years ago
0
Should individual transcriptomes be created for each individual fastq file?
#12
dakota-hawkins
opened
6 years ago
0
fastp fails on cluster submission
#11
dakota-hawkins
opened
6 years ago
0
Add function to get data files based on keyword
#10
dakota-hawkins
closed
6 years ago
1
Specify expected output files exactly from STAR genome generation
#9
dakota-hawkins
closed
6 years ago
1
Support run-specific configuration files.
#8
dakota-hawkins
closed
6 years ago
0
Align Metamorphosis Reads to Genome
#7
dakota-hawkins
closed
6 years ago
0
Ensure FilterUncorrectablePEfastq Python3 Compatibility
#6
dakota-hawkins
closed
6 years ago
0
Perform fastp quality control for reads.
#5
dakota-hawkins
closed
6 years ago
1
Remove erroneous k-mers using rCorrector
#4
dakota-hawkins
closed
6 years ago
0
Combine Replicate Assemblies with TACO
#3
dakota-hawkins
opened
6 years ago
0
Filter metamorphosis reads
#2
dakota-hawkins
closed
6 years ago
2
Implement assembly
#1
dakota-hawkins
opened
6 years ago
1