Open Yuxuan0060 opened 2 years ago
Hi,
I tried to install bamliquidator on centos7. I ran the following commands first
sudo yum install wget wget https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm sudo rpm -ivh epel-release-latest-7.noarch.rpm sudo yum install git make automake gcc gcc-c++ samtools-devel python-devel boost-devel hdf5-devel gperftools-devel tbb-devel zlib-devel lapack-devel samtools cmake sudo easy_install-2.7 pip install the python packages in a virtualenv or globally, e.g. sudo pip install bokeh==0.9.3 "openpyxl>=1.6.1,<2.0.0" tables unittest2 scipy
And then tried git clone https://github.com/BradnerLab/pipeline.git cd pipeline/bamliquidator_internal make
But I got the following error messages: g++ -O3 -g -Wall -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o bamliquidator bamliquidator.o bamliquidator.m.o -lbam -lz -lpthread /usr/bin/ld: cannot find -lbam collect2: error: ld returned 1 exit status make: *** [bamliquidator] Error 1
Is there any idea how I can fix those errors and get bamliquidator installed on centos7? Thank you!
Hi,
I tried to install bamliquidator on centos7. I ran the following commands first
sudo yum install wget wget https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm sudo rpm -ivh epel-release-latest-7.noarch.rpm sudo yum install git make automake gcc gcc-c++ samtools-devel python-devel boost-devel hdf5-devel gperftools-devel tbb-devel zlib-devel lapack-devel samtools cmake sudo easy_install-2.7 pip install the python packages in a virtualenv or globally, e.g. sudo pip install bokeh==0.9.3 "openpyxl>=1.6.1,<2.0.0" tables unittest2 scipy
And then tried git clone https://github.com/BradnerLab/pipeline.git cd pipeline/bamliquidator_internal make
But I got the following error messages: g++ -O3 -g -Wall -L/usr/lib/x86_64-linux-gnu/hdf5/serial -o bamliquidator bamliquidator.o bamliquidator.m.o -lbam -lz -lpthread /usr/bin/ld: cannot find -lbam collect2: error: ld returned 1 exit status make: *** [bamliquidator] Error 1
Is there any idea how I can fix those errors and get bamliquidator installed on centos7? Thank you!