[feature request] get rid of bet parameter in Modality + rename to atlas preprocessor

BrainLesion / preprocessing

preprocessing tools for multi-modal 3D brain MRI

GNU Affero General Public License v3.0

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Closed neuronflow closed 7 months ago

neuronflow commented 7 months ago

Instead, we control the outputs by providing paths:

raw_brainextracted_output_path,
normalized_brainextracted_output_path,
raw_withskull_output_path,
normalized_withskull_output_path,