Tools for MRI diffusion in human and NHP

[julfou81]

Title: Tools for MRI diffusion in human and non-human primates

Project lead and collaborators: Julien Sein David Meunier Arnaud Le Troter Hugo Dary Description: There are many pipelines for processing diffusion MRI data (diffuse, qsiprep, mrtrix pipelines, FSL pipelines, dipy, Designer, etc.). For newcomers in the field of Diffusion MRI, it may be overwhelming to pick the tools that best fits the needs, as well as to define the needs themselves. (NHP specific) : NHP image processing has specific challenges such as image reorientation, which can be more tricky when the Diffusion Vectors as to follow the transformation applied to the diffusion images. Goals for Brainhack Marseille We aim at sharing expertise, identify specific problems encountered by users, and define quality metrics (quality of orientation vectors, qualitative and quantitative quality check of processing stages) (NHP specific) : We also aim at integrating segmentations computed externally to mrtrix and FSL pipelines, that are non-specific pipelines (i.e. also available for human images)

Skills: MRI diffusion (general knowledge) 50% MRI processing 50% pipelining (30-70%)

Striking Image

Communication channels : https://github.com/Centre-IRM-INT/MRI_Diffusion https://mattermost.brainhack.org/brainhack/channels/mri_diffusion

https://univ-amu-fr.zoom.us/j/92141093977?pwd=cEorbHI3bzVFZlVwSE9FRVZiaUNGZz09

Programed schedule Tuesday 7th December, 2pm CET : discussion on tools and pipelines for MRI diffusion processing

[julfou81]

@StanSStanman Merci Ruggero! @davidmeunier79

[StanSStanman]

Dear @julfou81, we added your project on the BHM2021 website. :tada: Please check if all the information are correct, and tell us if you would like to change something.

Small advice for you: the description of the project that you gave us is full of suspense but really short and not so informative. I think it would be better to add a couple of lines of description in order to make it more appealing and help BHM participants to understand your project.

Ruggero

[julfou81]

Merci Ruggero! I will complete de project description.

[julfou81]

Hi @StanSStanman, I have updated the project description, it is you who has to update the project on the BrainHack page and can also do it? Thank you anyway!

[StanSStanman]

Hello @julfou81 , update done! See you!