maedoc
commented
7 months ago Hi @brainhackorg/project-monitors my project is ready!
Open maedoc opened 7 months ago
maedoc
commented
7 months ago Hi @brainhackorg/project-monitors my project is ready!
arnaudletroter
commented
7 months ago Hi Marmaduke, Thanks for submitting your project to BHM 2023. Your project is now visible online ! Arnaud for The BHM organization team.
Title
Building models that interpret neuroimaging data
Leaders
Marmaduke Woodman
Collaborators
it's early days
Brainhack Global 2023 Event
Brainhack Marseille
Project Description
We are writing a new implementation of whole brain models oriented towards recent machine learning algorithms. This implementation is for students & post docs who will come up with tomorrow's theory of brain (dys)function and need better tools for doing so.
Our project is 🦄🦄🦄 because we are building fine-grained models of neural dynamics in entire cohorts where current whole brain models only maps coarse-grained statistics.
The package is being developed at https://github.com/ins-amu/vbjax and includes neural mass and field models, forward models for MEG/fMRI and some data fitting examples.
For the brain hack we will use data from HCP MEG with Brainstorm based preprocessing; scripts at https://github.com/maedoc/friedchicken, but this is not so much the focus of the project.
More resources on the background of the modeling is available at https://thevirtualbrain.org and https://www.ebrains.eu/tools/the-virtual-brain.
Link to project repository/sources
https://github.com/ins-amu/vbjax
Goals for Brainhack Global
Good first issues
Communication channels
nothing for the moment
Skills
Onboarding documentation
https://github.com/ins-amu/vbjax#readme
What will participants learn?
Data to use
We are using mostly data from HCP https://db.humanconnectome.org,
Number of collaborators
2
Credit to collaborators
https://github.com/ins-amu/vbjax/graphs/contributors
Image
https://avatars.githubusercontent.com/u/6401490?s=48&v=4
Type
method_development, other
Development status
2_releases_existing
Topic
bayesian_approaches, causality, connectome, deep_learning, machine_learning, neural_networks, reproducible_scientific_methods, statistical_modelling, systems_neuroscience
Tools
Brainstorm, Jupyter, MNE, other
Programming language
containerization, documentation, Matlab, Python
Modalities
MEG, other
Git skills
0_no_git_skills, 1_commit_push, 2_branches_PRs
Anything else?
No response
Things to do after the project is submitted and ready to review.
Hi @brainhackorg/project-monitors my project is ready!