Describe the bug
The problem is the consideration of never achieving allocation wasn't originally implemented. Thus there is an error such that it running and being put in temp wait instead of a forced wait then causes a new problem such that the job will error out during the archival process because job_list is never created because in order to read it I use the expectation that the server has allocated a number and implements in as a file with a specific name. Since it is waiting for resource allocation there is no guarantee that it will get it before the sleep timer ends(this was implemented to decrease the waste of comp time). To fix said problem I would need to implement it into the sequential section likely the organize.py file for hoomd and openmm section or I would need to implement it in another way. This need to corrected because its existence could cause problems with others using the code. Currently it is done in parallel and need to be moved to guarantee flawless operation.
Brandman88
commented
1 year ago
Describe the bug The problem is the consideration of never achieving allocation wasn't originally implemented. Thus there is an error such that it running and being put in temp wait instead of a forced wait then causes a new problem such that the job will error out during the archival process because job_list is never created because in order to read it I use the expectation that the server has allocated a number and implements in as a file with a specific name. Since it is waiting for resource allocation there is no guarantee that it will get it before the sleep timer ends(this was implemented to decrease the waste of comp time). To fix said problem I would need to implement it into the sequential section likely the organize.py file for hoomd and openmm section or I would need to implement it in another way. This need to corrected because its existence could cause problems with others using the code. Currently it is done in parallel and need to be moved to guarantee flawless operation.