Make compute_blobs.py accept command line arguments for FASTA inputs and config files

BranniganLab / blobulator

Blob-based analysis of protein sequences - available online at blobulator.branniganlab.org and as an open-source tool.

GNU General Public License v3.0

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Make compute_blobs.py accept command line arguments for FASTA inputs and config files #155

Closed EzryStIago closed 2 years ago

EzryStIago commented 3 years ago

Currently, "python3 compute_blobs.py" just blobulates an example sequence. I think users should be able to provide one or more FASTA files and set cutoffs without having to modify the python code directly.

ttjoseph commented 2 years ago

@EzryStIago will use argparse to parse command line arguments

EzryStIago commented 2 years ago

Working version in batchJobs: https://github.com/BranniganLab/blobulator/commit/4ad880a534022246ab6fa1723310577059f04987

cpitman-11 commented 2 years ago

@mebh - could you please test this feature?