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BreakerLab / dimpl

DIMPL: Discovery of Intergenic Motifs PipeLine
MIT License
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Organize output from DIMPL results into subfolders #6

Closed kenibrewer closed 10 months ago

kenibrewer commented 4 years ago

Currently DIMPL puts all the results from a motif/igr search into one single directory for that motif/igr. This results in 50-100 files in the directory that need to be sorted through.

A better functionality would be to sort the files into different subfolders based on which program created them. E.g. CMfinder, Rscape, Infernal etc. This functionality will require changes to 3-IGR-Report.ipynb, notebooks/4-Motif-Refinement.ipynb, src/data/command_build.py, and src/shell/infernal_run_template.sh.

kenibrewer commented 10 months ago

DIMPL will be rebuilt into a Nextflow pipeline instead.