BrendelGroup / AEGeAn

Integrated toolkit for analysis and evaluation of annotated genomes
http://brendelgroup.github.io/AEGeAn
ISC License
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fail to compile #154

Closed alpapan closed 8 years ago

alpapan commented 9 years ago

Hello

Using Genometools 1.5.5 (as recommended on docs), it seems to fail to compile (i may be doing smth wrong).

Genometools compiled/installed OK (with cairo=no)

$ make prefix=pwd/../ cairo=no 64bit=yes

[compile AgnAttributeFilterStream] [compile AgnCliquePair] [compile AgnCompareReportHTML] src/core/AgnCompareReportHTML.c: In function ‘compare_report_html_locus_handler’: src/core/AgnCompareReportHTML.c:492:5: error: implicit declaration of function ‘agn_locus_print_png’ [-Werror=implicit-function-declaration] agn_locus_print_png(locus, rpt->pngdata); ^ cc1: all warnings being treated as errors make: *\ [obj/AgnCompareReportHTML.o] Error 1

With errorcheck=no obj/AgnCompareReportHTML.o: In function compare_report_html_locus_handler': /home/alexie/software/git/JAMg/3rd_party/AEGeAn-0.14.1/src/core/AgnCompareReportHTML.c:492: undefined reference toagn_locus_print_png' /home/alexie/software/git/JAMg/3rd_party/AEGeAn-0.14.1/..//lib/libgenometools.so: undefined reference to dlopen' /home/alexie/software/git/JAMg/3rd_party/AEGeAn-0.14.1/..//lib/libgenometools.so: undefined reference todlclose' /home/alexie/software/git/JAMg/3rd_party/AEGeAn-0.14.1/..//lib/libgenometools.so: undefined reference to dlerror' /home/alexie/software/git/JAMg/3rd_party/AEGeAn-0.14.1/..//lib/libgenometools.so: undefined reference todlsym'

any ideas? could it be the GT version? I tried with GT 1.5.2 (cairo=no 64bit=yes) and got the same error

alpapan commented 9 years ago

the above report was for the latest stable release (14.1); works fine with the master HEAD.....

standage commented 8 years ago

Thanks for the report!

Indeed, this bug has been fixed since v0.14.1 and will be released with the next stable release.