vmatch by default only finds direct matches (-d option)
this code modification explicitly looks for reverse strand matches (-p option) as well
for paired-end reads maybe the previous implementation was sufficient (and faster) but conceptually the approach was odd - there are definitely scenarios when we want the reverse matches to be found
vmatch by default only finds direct matches (-d option)
this code modification explicitly looks for reverse strand matches (-p option) as well
for paired-end reads maybe the previous implementation was sufficient (and faster) but conceptually the approach was odd - there are definitely scenarios when we want the reverse matches to be found