BrendelGroup / SRAssembler

Selective and Recursive local Assembler
GNU General Public License v3.0
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added -d/-p options to vmatch #2

Closed vpbrendel closed 7 years ago

vpbrendel commented 7 years ago

vmatch by default only finds direct matches (-d option)

this code modification explicitly looks for reverse strand matches (-p option) as well

for paired-end reads maybe the previous implementation was sufficient (and faster) but conceptually the approach was odd - there are definitely scenarios when we want the reverse matches to be found