More fastq but failed to assembly

BrendelGroup / SRAssembler

Selective and Recursive local Assembler

GNU General Public License v3.0

15 stars 6 forks source link

More fastq but failed to assembly #29

Open YaoZhou89 opened 4 years ago

YaoZhou89 commented 4 years ago

Hi, I used SRAssembler for assembly recently, but it was strange that it failed when I increased size of fastq data, however I could run it successfully using small testing data. Should I set some latent parameters?

YaoZhou89 commented 4 years ago

One more things: when I used more data, there's a comment like this: vmatch: searchlength=8 must be >= 9=prefixlen

Does the parameter searchlength relate with data size?

vpbrendel commented 4 years ago

Yes. Please check the Vmatch manual on the web for details.