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BrentLagesse / YeastAnalysisTool

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Look at existing image analysis tools to see if there is anything we want to add in. #13

Open BrentLagesse opened 1 year ago

BrentLagesse commented 1 year ago

@Hoppe-S will send us a list of existing analysis tools and we will work on integrating features they have into our tool because this might be helpful for future researchers

BrentLagesse commented 1 year ago

These are the systems we should examine. It might be a good idea to coordinate with a biology researcher to help walk through what is interesting in these pieces of software.

Cell-ACDC (this was built off of YeaZ and Cellpose below) https://www.biorxiv.org/content/10.1101/2021.09.28.462199v2 [biorxiv.org]

YeaZ https://www.nature.com/articles/s41467-020-19557-4 [nature.com]

Cellpose https://www.nature.com/articles/s41592-020-01018-x [nature.com]

MAARS (this is for fission yeast but maybe some stuff would translate) https://www.molbiolcell.org/doi/10.1091/mbc.e16-10-0723 [molbiolcell.org]