search

BrkRaw / brkraw

BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
https://brkraw.github.io
GNU General Public License v3.0
43 stars 28 forks source link

Only json file creation #99

Open arefks opened 1 year ago

arefks commented 1 year ago

Is your feature request related to a problem? Please describe. Not a problem specifically. I am interested only in the JSON files. Is there a solution to how to do this?

Describe the solution you'd like A flag that could suppress the creation of the nii files, or a flag that would ONLY create the corresponding JSON files.

Describe alternatives you've considered A clear and concise description of any alternative solutions or features you've considered.

Additional context Nice Tool

dvm-shlee commented 1 year ago

@arefks Could you provide more detail about what function you want to have? For example, do you want to generate JSON on BIDS? or for a single NII file you already converted?

arefks commented 1 year ago

@dvm-shlee I have a huge longitudinal dataset with raw mri imaging files. I have already transformed them to NII long time ago with a specific naming/folder structure. (with the use of: https://github.com/aswendtlab/AIDAmri/blob/master/bin/conv2Nifti_auto.py ), As the NII files don't contain all of the meta information stored in the raw data, I wanted to add corresponding JSON files to each sequence. The thing I had in mind would be something like this:

brkraw tonii <input raw data> -b -d

( with the d standing for deactivation of data conversion) so now only the JSON files would be produced. I could sort them out myself afterward with the help of a short script.

I hope this was clear enough. Write me again if it needs more explanation.