search

BrooksLabUCSC / flair

Full-Length Alternative Isoform analysis of RNA
Other
211 stars 71 forks source link

python version confusion #169

Closed diekhans closed 2 years ago

diekhans commented 3 years ago

It appears that FLAIR works on either python2 or python3, however, the documentation isn't clear on this. Many users assume that it does not work on python3 if it is explicitly stated.

however, kerneltree doesn't install on python3.9 and the site says it is no longer maintained https://github.com/biocore-ntnu/kerneltree

I would suggest just giving up on python2, it is obsolete.

diekhans commented 3 years ago

a requirements.txt file would be really useful

herber4 commented 2 years ago

agreed. have you had any success running flair, if so, which python version are you using?

diekhans commented 2 years ago

I ran it previously with py 2.7, but that was a couple of years ago.

Jeltje commented 2 years ago

We have removed support for py 2.7. Please run Flair using python3 or, even easier:

conda install -c conda-forge -c bioconda flair