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BrooksLabUCSC / flair

Full-Length Alternative Isoform analysis of RNA
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deFLAIR cannot run on more than two groups #212

Open Jeltje opened 2 years ago

Jeltje commented 2 years ago

The code itself expects any number of groups, but runDE.py chokes on line 140 when it receives more than one:

    R('name <- grep("condition", resultsNames(dds), value=TRUE)')

because this results in a list instead of a single entry.

Note to self: Either make this a documented feature or solve the bug.