Open Jeltje opened 1 year ago
Currently the gene_id field in drimseq_<>_A_v_B.tsv contains coordinates:
gene_id
feature_id gene_id A1_A_b0 A2_A_b0 A3_A_b0 B1_B_b0 B2_B_b0 B3_B_b0 lr adj_pvalue exclusion_chr20:35556271 chr20:35556271-35556954_chr20:35556271-35556972 0.677 0.677 0.677 0.021 0.021 0.021 1601.9 0 inclusion_chr20:35556271 chr20:35556271-35556954_chr20:35556271-35556972 0.323 0.323 0.323 0.979 0.979 0.979 1601.9 0
This coordinate information is also available in the diffsplice.<>.events.quant.tsv files, which are already linked via their feature_id:
feature_id
feature_id coordinate A1_A_b0 A2_A_b0 A3_A_b0 B1_B_b0 B2_B_b0 B3_B_b0 isoform_ids inclusion_chr20:35556271 chr20:35556271-35556954_chr20:35556271-35556972 43.0 59.0 47.0 5900.0 5800.0 4700.0 ENST00000451605.1_ENSG00000125991.19 exclusion_chr20:35556271 chr20:35556271-35556954_chr20:35556271-35556972 104.0 102.0 110.0 131.0 111.0 110.0 ENST00000348547.6_ENSG00000125991.19,HISEQ:1287:HKCG7BCX3:1:1106:1276:65058_ENSG00000125991.19
It would be more useful if the gene ID was extracted from the .quant.tsv files and put into the drimseq output.
Currently the
gene_id
field in drimseq_<>_A_v_B.tsv contains coordinates:This coordinate information is also available in the diffsplice.<>.events.quant.tsv files, which are already linked via their
feature_id
:It would be more useful if the gene ID was extracted from the .quant.tsv files and put into the drimseq output.