As it is stated in the documentation (https://flair.readthedocs.io/en/latest/modules.html#flair-collapse) the "ginormous" option in the filter parameter will remove transcripts that follow the characteristics of the comprehensive set + monoexonic isoforms.
I have compared a GTF transcriptome file created using the default option with one generated with the "ginormous" option, and although there are some monoexonic transcripts that have been filtered out, I do not understand why other monoexonic isoforms have remained.
As it is stated in the documentation (https://flair.readthedocs.io/en/latest/modules.html#flair-collapse) the "ginormous" option in the filter parameter will remove transcripts that follow the characteristics of the comprehensive set + monoexonic isoforms. I have compared a GTF transcriptome file created using the default option with one generated with the "ginormous" option, and although there are some monoexonic transcripts that have been filtered out, I do not understand why other monoexonic isoforms have remained.
Thank you in advance! :)