git cloned the current repository (to obtain access to the test directory on the github page)
What happened?
(flair) ryleyd@minion:~/test$ make test
mkdir -p test_output
mkdir -p test_diffs
flair align -r test_input/reads.fa --genome test_input/genome.fa -t 4 -o test_output/test.align
Possible minimap2 error, specify executable path with -m?
make: *** [makefile:25: test-align] Error 1
(flair) ryleyd@minion:~/test$
What else do we need to know?
minimap2 is executable on its own and when my peer who also installed flair using conda create -n flair -c conda-forge -c bioconda flair on the same device (but with miniconda3 instead of anaconda3), he was able to get flair align to work fine
Copy and paste the exact command you tried to run make test as per the testing flair module https://flair.readthedocs.io/en/latest/testrun.html How did you install Flair?
bioconda (e.g.
conda create -n flair -c conda-forge -c bioconda flair)git cloned the current repository (to obtain access to the test directory on the github page)
What happened?
What else do we need to know? minimap2 is executable on its own and when my peer who also installed flair using
conda create -n flair -c conda-forge -c bioconda flairon the same device (but with miniconda3 instead of anaconda3), he was able to get flair align to work fine