BrooksLabUCSC / flair

Full-Length Alternative Isoform analysis of RNA
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Unable to install Flair using bioconda #249

Closed jwyli closed 1 year ago

jwyli commented 1 year ago

Hi and thank you for creating this useful tool!

I attempted to install Flair using bioconda as suggested:

conda create -n flair -c conda-forge -c bioconda flair 

It either gets stuck on the solving environment for a long time:

Collecting package metadata (current_repodata.json): done Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): /

Or it turns up an error message:

Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: | Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed

I have installed other packages with anaconda successfully so it seems to be a problem specific to this environment I am attempting to create? I am using conda 23.1.0.

Thanks a lot!

jwyli commented 1 year ago

Dropping by to say I have solved the issue using mamba. Turns out the problem is with the condo solver after all. Thank you!